Additional file 2 of Resistomes and microbiome of meat trimmings and colon content from culled cows raised in conventional and organic production systems

Additional file 2: Data 1. Number of Individual samples within composite sample. Data 2. Carcass Meat Trimmings production system antimicrobial resistance determinants class log2 fold change pairwise differences. Data 3. Carcass Meat Trimmings facility antimicrobials resistance determinant's class log2 fold change pairwise differences. Data 4. Count matrix of raw reads attributed to antibiotic resistance determinant's aggregated by class of resistance. Data 5. Carcass Meat Trimmings production system antimicrobials resistance determinant's mechanism log2 fold change pairwise differences. Data 6. Carcass Meat Trimmings facility antimicrobials resistance determinant's mechanism log2 fold change pairwise differences. Data 7. Count matrix of raw reads attributed to antibiotic resistance determinant's aggregated by mechanism of resistance. Data 8. Colon content facility antimicrobials resistance determinant's class log2 fold change pairwise differences. Data 9. Colon content production system antimicrobials resistance determinant's class log2 fold change pairwise differences. Data 10. Colon content facility antimicrobials resistance determinant's mechanism log2 fold change pairwise differences. Data 11. Colon content production system antimicrobials resistance determinant's mechanism log2 fold change pairwise differences