Datasets for: Integrative Mapping of Human CD8+ T Cell in Inflammation and Cancer

Files for the integrated pan-disease CD8+ T cell atlas: huARdb_v2_GEX.CD8.all_genes.h5ad.gz : 19957 genes raw matrix huARdb_v2_GEX.CD8.hvg4k.h5ad : 4000 highly variable genes raw matrix huARdb_v2_GEX.CD8.hvg4k.X_gex.npy : scatlasavae model embedding huARdb_v2_GEX.CD8.clone_subtype.csv : clone type definition huARdb_v2_GEX.CD8.hvg4k.supervised.model. scatlasavae model checkpoint huARdb_v2_GEX.CD8.hvg4k.h5ad : Tex subset of 4000 highly variable genes raw matrix huARdb_v2_GEX.CD8.hvg4k.Tex.supervised.model. scatlasavae model checkpoint for the Tex subset Files for the TILs CD8+ T cell atlas adata_cd8_chu.h5ad. the Chu et al., 2023 Dataset adata_cd8_zheng.h5ad. The Zheng et al., 2021 Dataset Files for the transfer (query) datasets: Zhang_LC.CD8_T.h5ad Luoma_HNSCC_TIL.CD8_T.h5ad Luoma_HNSCC_PBMC.CD8_T.h5ad Watson_MELA.CD8_T.h5ad Bassez_BC.cohort1.CD8_T.h5ad Bi_RCC.CD8_T.h5ad Caushi_NSCLC.CD8_T.h5ad Liu_TNBC.CD8_T.h5ad Borràs_2024_Colorectal_cancer.CD8_T.h5ad Garner_2023.h5ad Vorkas_2022_MAIT.h5ad