MOESM16 of Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing

Additional file 16. LTR repeats are deregulated upon Setdb1 depletion. Analysis of repeat class expression from RNA-seq in differentiating ES cells is shown. Analysis is split into reads mapping either to all chromosomes or specifically to the X chromosome at both days 3 and 5 of differentiation. The average fold-change between Setdb1 knockdown and Nons is indicated for each repeat, as is the average expression for that repeat. Chi squared calculations based on repeats with a log2 fold-change greater than 1 are given.