IBP-database and environmental IBP sequences for functional analysis of microalgae
收藏资源简介：
Database for analysis of ice binding protein (IBP) sequences (Uhlig et al. (2015)): (1) DUF3494_seqs_Uniprot.fasta: full length sequences with DUF3494 domain used for the calculation of the backbone tree in the phylogenetic placement (2) env_IBPs.fasta: potential IBP sequences from one Arctic and five Antarctic sea ice metatranscriptomes (Sanger or 454) (3) DUF3494_substree_fig2a_UniprotIDs.txt: UniProtIDs for subtree in Fig 2a (4) DUF3494_confirmed_IBPactivity_UniprotIDs.txt: UniProtIDs for sequences with confirmed IBP function of the protein If using this dataset please cite the following publication: Uhlig, C., Kilpert, F., Frickenhaus, S., Kegel, J.U., Krell, A., Mock, T., Valentin, K., Beszteri, B., (2015) The significance of antifreeze proteins for eukaryotic microbial communities of Arctic and Antarctic sea ice, The ISME Journal, 9, 2537–2540, doi:10.1038/ismej.2015.43
本数据集为冰结合蛋白（ice binding protein, IBP）序列分析数据库（源自Uhlig等2015年的研究），包含以下4个文件：1. DUF3494_seqs_Uniprot.fasta：用于系统发育定位中骨干树构建的携带DUF3494结构域的全长序列文件；2. env_IBPs.fasta：采自1份北极与5份南极海冰宏转录组、采用Sanger或454测序技术获得的潜在冰结合蛋白序列文件；3. DUF3494_substree_fig2a_UniprotIDs.txt：对应图2a中子树的通用蛋白质数据库（UniProt）标识符列表文件；4. DUF3494_confirmed_IBPactivity_UniprotIDs.txt：包含经实验验证其蛋白具有冰结合蛋白功能的序列对应的通用蛋白质数据库（UniProt）标识符列表文件。若使用本数据集，请引用以下文献：Uhlig, C., Kilpert, F., Frickenhaus, S., Kegel, J.U., Krell, A., Mock, T., Valentin, K., Beszteri, B. (2015) 《北极与南极海冰真核微生物群落的抗冻蛋白意义》，The ISME Journal, 9, 2537–2540, doi:10.1038/ismej.2015.43
