List of previously published QTLs for yield and yield related traits identified in recombinant inbred line population (Nipponbare x 93-11) based on Gramene QTL database.

Number of expressed genes identified in leaves, roots and meristem tissues based on their location in the mapped yield and yield related QTLs. LOD score ≥5 was used to identify the genes located in the mapped yield and yield related QTLs. Average LOD score was calculated for each QTL detected based on 6 experiments (more details are given in the supplemental table 1 and supplemental table 5). Note: *- indicate the QTL is unnamed in Gramene rice QTL database-http://gramene.org/qtl/ or Japanese Rice QTL database - http://qtaro.abr.affrc.go.jp/. #-Qtl identified in multiple locations. ∧- A positive additive effect indicates the Nipponbare allele increases the phenotype.