Additional file 6: of Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on α-cellulose, xylan, cellobiose and xylose

Expression values and Znet values of genes and gene products identified in C. termitidis cultured under various substrate conditions. Normalized proteomic Z-scores Pnet are represented as: (i) P0: xylose grown cells – cellobiose grown cells; (ii) P1: α-cellulose grown cells – cellobiose grown cells; and (iii) P2: xylan grown cells – cellobiose grown cells. Normalized transcriptomic Z-scores Rnet are represented as: (i) R0: xylose grown cells – cellobiose grown cells; (ii) R1: α-cellulose grown cells – cellobiose grown cells; and (iii) R2: xylan grown cells – cellobiose grown cells. For any protein or RNA transcripts, a negative value represents higher expression on cellobiose, while a positive value represents higher expression in any of the other corresponding substrate. Signal to Noise ratios (S/N) of individual genes under two comparing conditions are given. S/N0: xylose grown cells vs cellobiose grown cells; S/N1: α-cellulose grown cells – cellobiose grown cells; S/N2: xylan grown cells – cellobiose grown cells. Genes with a S/N value 2.8 or greater have a false discovery rate (FDR) 10 % or less. CB, Cellobiose; AC, α-cellulose; Numbers in brackets indicate biological replicate. (XLSX 817 kb)