Transcriptomes of AH- and VH-grown S. aureus SA564.

a ORFs were identified by BLAST analysis of Affymetrix array target sequences, as described in the materials and methods. If a corresponding ORF was identified in S. aureus COL, that strain's ORF identifiers were used as default. SACOL####, S. aureus COL (GenBank accession number CP000046.1); SAV####, S. aureus Mu50 (BA000017.4); SA####, S. aureus N315 (BA000018.3); SAOUHSC_####, S. aureus NCTC 8325 (CP000253.1). Vertical lines indicate genes computationally predicted to be in the same transcriptional unit. Gene names in brackets were assigned in this study using data shown in Table S1.b Fold change in expression of genes during S. aureus SA564 growth in AH as compared to growth in glucose-supplemented CDM; a positive number indicates an up-regulation of the gene during growth in AH. Standard deviation is shown in parentheses. Fold changes ≥3 and c Fold change in expression of genes during S. aureus SA564 growth in VH as compared to growth in glucose-supplemented CDM; a positive number indicates an up-regulation of the gene during growth in VH. Standard deviation is shown in parentheses. Fold changes ≥3 and d Fold change in expression of genes during S. aureus SA564 growth in VH as compared to growth in AH; a positive number indicates an up-regulation of the gene during growth in VH. Standard deviation is shown in parentheses. Fold changes ≥3 and e At least two differentially expressed probe sets were assigned to these ORFs. Data for all probe sets are shown in Table S1.f On genomic island vSA4 [48].g On φCOL [48].h On φSa1 [48].i On φSa3 [48].Transcriptomes of AH- and VH-grown S. aureus SA564.