p_paraeruginosa_allstrains_allcontigs.fasta

This database file contains the sequences of all 7 complete genomes and all contigs of 75 draft genomes of the novel species Pseudomonas paraeruginosa. Currently only a few of these have been correctly identified in NCBI; most are still called Pseudomonas aeruginosa. DNA and protein searches (blastn, tblastn) using the NCBI wgs database, limited to the genus Pseudomonas, are very slow and often exceed CPU limits. This database (~580Mb) can be searched using Pearson's fasta36 or tfastx36 (among other tools) in under a minute on a personal computer e.g. MacBook Pro.