five

Data and scripts for ELIC agonism and antagonism study

收藏
DataCite Commons2022-10-20 更新2024-07-29 收录
下载链接:
https://figshare.com/articles/dataset/MSA_and_SCA_script_for_commsbio_2022/19127057/2
下载链接
链接失效反馈
官方服务:
资源简介:
For performing SCA on our Alignments: Multiple Sequence Alignment and Matlab scripts to run Statistical Coupling Analysis to reproduce our results on sector positions for our manuscript on ELIC. Lists of the UniRef100 accession codes for the proteins in the alignments are also provided. <br> The Matlab scripts (*.m extension) contain must of the comments from tutorials of the original SCA v5.0 toolbox (Ranganathan Lab). The comments were edited in accordance to our particular input data and the outputs we were obtaining at each step. <br> To run these scripts it is necessary: -MATLAB with the Bioinformatics Toolbox, as well as the Statistics and Machine Learning Toolbox.<br> -SCA v5.0 toolbox from Ranganathan Lab. For more details please refer to their 2012 paper (https://doi.org/10.1038/nature11500) -The results on the sector positions will be printed in the Command Window of MATLAB <br> For the TEVC analyses (Source_Data.zip): <br> - The raw TEVC data is reported in the "Raw_TEVC_Traces" folder for each figure. <br> - Using the "Plotting_TEVC_Traces.R" script the TEVC plots shown in the manuscript can be generated (without the concentration annotations). <br> - All data presented in dose response curves or bar graphs were acquired by processing the TEVC traces. The steps are detailed in the file <br> "Processing_TEVC_traces" within each figures folder.<br>
提供机构:
figshare
创建时间:
2022-10-20
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作