Supplementary data for "Fast and Accurate <i>in silico</i> Antigen Typing with Kaptive 3"

Supplementary data for "Fast and Accurate <i>in silico</i> Antigen Typing with Kaptive 3"Data included here:<b>Fast and Accurate </b><b><i>in silico</i></b><b> Antigen Typing with Kaptive 3 </b><b>Supplementary materials - DOCX file: </b>Microsoft office document containing: Supplementary results<b>Table S1. </b>Confidence score criteria of Kaptive v≤2Figures S1-4<b>Table S2 – CSV file</b>: <b>Test assemblies and Kaptive outputs.</b> Assembly and sequencing information (columns A-M), Kaptive version, species and database (columns N-P), Kaptive output (columns Q-AH), ground truth locus calls and Kaptive call outcomes (columns AI-AM).<b>Table S3 – CSV file</b>: <b>K and O/OC locus gene sequencing coverage and GC content.</b> Genome information, species and Kaptive database, Illumina read coverage (non-subsampled reads), GC content and absolute GC difference compared to the matched completed chromosome.<b>Table S4 – CSV file</b>: <b>Kaptive v3 score and weighting metric combinations for the test assemblies.</b><b>Table S5 – CSV file</b>: <b>Performance metric summaries by assembly group and database.</b><b>Table S6 – CSV file</b>: <b>Kaptive compute times</b>