Longitudinal lineage tracing reveals early clonal attrition during Drosophila midgut aging

This archive contains important processed data and analysis code associated with the manuscript “Longitudinal lineage tracing reveals early clonal attrition during Drosophila midgut aging”. The code folder contains scripts used for calculating effective population size and clonal diversity in the Drosophila midgut. The data folder contains phylogenetic tree annotations, IQ-TREE phylogenetic trees, Phylotime time-scaled phylogenetic trees, 500 bp readout sequences used to construct the phylogenetic trees, and graph structure files for intestinal stem cell lineages. Raw sequencing data generated in this study have been deposited in the NCBI Sequence Read Archive under accession number PRJNA1223692 and are not included in this archive. This Zenodo record provides a permanent archived version of the processed data and code that are also available at GitHub: https://github.com/Gh370/MidgutLineageDiversity. Further details are provided in the README file included in the archive.