Mitochondrial sequence data and phylogenies from Predicting extinction risk of gibbons from genomes of extinct Yunnan lar gibbon

This dataset includes mitochondrial genome sequences and phylogenetic tree files generated in our study on gibbon evolutionary relationships, with a particular focus on the Yunnan lar gibbon (Hylobates lar yunnanensis). 1. Mitochondrial genome sequences Mitochondrial genome consensus sequences for eight lar gibbon individuals, generated using the MIA assembly approach. The files are provided in FASTA format: 146.mia.consensus.fasta — HLA_Yunnan146 147.mia.consensus.fasta — HLA_Yunnan147 148.mia.consensus.fasta — HLA_Yunnan148 a42.mia.consensus.fasta — a42 a44.mia.consensus.fasta — a44 a53.mia.consensus.fasta — a53 a54.mia.consensus.fasta — a54 a108.mia.consensus.fasta — a108 2. Phylogenetic trees All phylogenetic trees reconstructed in this study are organized into four folders: Coalescent species tree – Gene trees from 10 genomic subsets generated using a coalescent-based approach, each file containing maximum likelihood phylogenetic trees inferred from 10-kb windows at 100-kb intervals across the whole genome. Maximum Likelihood mt-tree – Maximum Likelihood phylogenetic tree of the complete mitogenome along with divergence times. Neighbor-Joining tree – Neighbor-joining phylogeny reconstructed from nuclear genome SNPs. Maximum Likelihood cytb-tree – Maximum likelihood phylogenetic tree inferred from cytochrome b (cytb) gene sequences.