Extract phenotypic abnormalities and the corresponding HPO codes
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**Extract phenotypic abnormalities and the corresponding HPO codes :** This model is developed to address the complex task of mapping phenotypic abnormalities observed in human diseases to their corresponding Human Phenotype Ontology (HPO) codes. Furthermore, the model returns associated codes from the following vocabularies for each HPO code: MeSH (Medical Subject Headings), SNOMED- UMLS (Unified Medical Language System ), ORPHA (international reference resource for information on rare diseases and orphan drugs), OMIM (Online Mendelian Inheritance in Man). **Key Features:** - Accurately maps phenotypic abnormalities to HPO codes, facilitating standardized documentation and analysis in medical research. - Features a 6X speedup in load time compared to its predecessors, making it significantly faster and more efficient. - Designed with a memory-friendly loading process that minimizes the maximum memory requirement, reducing the risk of Out of Memory (OOM) exceptions. The optimized memory usage allows the model to run effectively on less powerful hardware setups. This model supports medical research by facilitating the investigation of phenotypic abnormalities in genetic and rare diseases. It assists in the standardized documentation of patient phenotypes in clinical settings, contributing to accurate and consistent clinical documentation. Additionally, it provides support to genetic counselors, helping them understand and effectively communicate the implications of phenotypic abnormalities. **Additional Model Information** - [Industry Use-Case Demo](https://demo.johnsnowlabs.com/healthcare/ER_HPO/) - [Full model info on John Snow Labs Models Hub](https://nlp.johnsnowlabs.com/2021/05/16/sbiobertresolve_HPO_en.html) - **Domain:** Clinical Text Analysis - **Subdomain:** Terminology Codes - **Predictable entities:** HPO Codes - **Deployment Identifier:** 47. Extract phenotypic abnormalities and the corresponding HPO codes **How to run this model:** 1. Acquire a John Snow Labs Pay As You Go (PAYG) license from [Sales](mailto:sales@johnsnowlabs.com) 2. Import this listing 3. Use the attached notebook to deploy the model with **47. Extract phenotypic abnormalities and the corresponding HPO codes ** as the model parameter. **Do not use the Open button on this page which appears after importing this listing. It will fail to deploy a model and does not work yet, you must use the attached notebook.** This model comes with optimized CPU and GPU builds. You can select which one to deploy via the notebook.
