kraken2 database of rodent genomes for host decontamination
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kraken2 database of rodent genomes. Used in Nephele pipelines for decontamination of metagenomic datasets from rodent host reads (incl. mouse and human). Contained assemblies: in v1 and v2: Homo sapiens (assembly version GRCh38.p14), Mesocricetus auratus (BCM_Maur_2.0); and Mesocricetus auratus (MesAur1.0), Mustela putorius furo (ASM1176430v1.1), Mustela nigripes (MUSNIG.SB6536), Mustela erminea (mMusErm1.Pri), Mustela nivalis (MusNiv_Pri1.0), Mus musculus (GRCm39), Mus caroli ( CAROLI_EIJ_v1.1), Mus pahari (PAHARI_EIJ_v1.1) in v2 also: Rattus Rattus (CSIRO_v1) Ratus norvegicus (CRGr8)
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Zenodo创建时间:
2026-03-06



