orthomap - example data

Example data for python package orthomap. Includes OrthoFinder results for all translated coding sequences (CDS) from Ensembl release-105 (keeping only longest isoforms) and Xtropicalisv9.0.Named.primaryTrs.pep.fa from www.xenbase.org: <ensembl_105_orthofinder_Orthogroups.GeneCount.tsv.zip> <ensembl_105_orthofinder_Orthogroups.zip.tsv> Includes a table specifying the OrthoFinder species file names and its corresponding NCBI taxonomic IDs: <ensembl_105_orthofinder_species_list.tsv> Includes NCBI taxonomic tree for Ensembl release-105 species analysed: <ensembl_105_species_tree_ncbi_topology_named.nw> <ensembl_105_species_tree_ncbi_topology_named.pdf> Includes pre-calculated gene age assignments for C. elegans (Sun et al. 2021) and H. vulgaris (Cazet et al. 2022): <Sun2021_Orthomap.tsv> <Cazet2022_Orthomap.tsv> Includes extracted orthomaps for all Eukaryota from eggNOG database version 6.0 (Hernández-Plaza et al. 2022): <eggnog6_eukaryota_orthomaps.tsv.zip> Includes example data from the myTAI R package (Drost et al. 2018) <PhyloExpressionSetExample.h5ad> Includes extracted orthomaps for either HOMFAM or ORTHOFAM groups of plants from PLAZA database version 5.0 (Van Bel et al. 2022): <plaza_v5_dicots_HOMFAM_orthomaps.tsv.zip> <plaza_v5_dicots_ORTHOFAM_orthomaps.tsv.zip> <plaza_v5_monocots_ORTHOFAM_orthomaps.tsv.zip> <plaza_v5_monocots_ORTHOFAM_orthomaps.tsv.zip>