Phylogenetic tree computed with FastTree v2.1.11 from the whole genome alignment of E. coli CC87 genomes. Recombination have been filtered using Gubbins v2.3.4. The genome of IAI1 was used as an outgr
Phylogenetic tree computed from the core gene alignment of the 2,302 complete E. coli from RefSeq (command MSA in Ppanggolin). The tree was computed with Iqtree 1.6.12 (PMID: 25371430) using
