Additional file 2 of Inferring biological kinship in ancient datasets: comparing the response of ancient DNA-specific software packages to low coverage data

Additional file 2: Table S1.1. Results from all datasets using program lcMLkin and autosomal sites from the 1240k SNP panel. Table S1.2. Results from all datasets using program NGS relate and all shared autosomal sites. Table S1.3. Results from all datasets using program NGSrelate and autosomal sites on from the 1240k SNP panel. Table S1.4. Results from all datasets using program NGSremix and autosomal sites on the 1240k SNP panel. Table S1.5. Results from all datasets using program TKGWV2 and site from the 1240k SNP panel. Table S1.6. Results from all datasets using program TKGWV2 and autosomal sites from the panel of 22M SNP sites as described in the text. Table S1.7. Results from all datasets using program READ and autosomal sites from the 1240k SNP panel. Table S1.8. Results from all datasets using the Kennett method and autosomal sites from the 1240k SNP panel. Table S1.9. Mantel tests for all packages and datasets. Table S1.10. Accuracy, consistency and false positive calculations for the Koszyce/Schroeder dataset. Table S1.11. Accuracy, consistency and false positive calculations for the UP/Sikora dataset. Table S1.12. Accuracy, consistency and false positive calculations for the Viking/Willeslev dataset. Table S1.13. Accuracy, consistency and false positive calculations for the three WGS datasets. Table S1.14. Accuracy, consistency and false positive calculations for the modern/Fula dataset. Table S1.15. Coverages for all downsampled datafiles as calculated using samtools.