MITK-GEM: Software pipeline to GEnerate Models from images

An attempt to provide a software pipeline to interactively create finite element models from medical images. Primarily intended to model bone fracture risk.An application with graphical user interface and image processing plugins is provided. The application is build using the MITK Workbench software framework. The following plugins are available: fast image segmentation using graph cut, volume meshing using tetgen and density to modulus conversion for bone material property assignment.Documentation and tutorials are available on our <a href="http://araex.github.io/mitk-gem-site/">tutorial website</a>.Along with pre-compiled executables available here, the source code is available on our <a href="https://github.com/araex/mitk-gem">github page</a>.The graph cut segmentation plugin and the material mapping plugin were developed as part of research studies. If you use the software or source code in your research, please cite the corresponding journal <a href="https://simtk.org/project/xml/publications.xml/?group_id=1063">publications</a>. <br/><br/>This project includes the following software/data packages: <br/> <ul> <li> <a href="https://simtk.org/frs?group_id=1063#pack_1817">MITK-GEM </a> : Documentation and tutorials are available on our <a href="http://araex.github.io/mitk-gem-site/">tutorial website</a>.The source code is available on our <a href="https://github.com/araex/mitk-gem">github page</a>. </li> </ul>

本数据集旨在提供一个软件流程，以交互式方式从医学图像中构建有限元模型，主要针对骨折风险的建模。该应用配备了图形用户界面和图像处理插件。应用基于MITK Workbench软件框架开发。提供以下插件：利用图割算法进行快速图像分割、使用tetgen进行体积网格生成以及将密度转换为模量的插件，以分配骨材料属性。关于本数据集的文档和教程可在我们的教程网站上找到。除了可在此处获取的预编译可执行文件外，源代码也存放在我们的GitHub页面上。图割分割插件和材料映射插件是作为研究项目的一部分开发的。若您在研究中使用本软件或源代码，请引用相应的期刊出版物。该项目包含以下软件/数据包：

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<li><a href="https://simtk.org/frs?group_id=1063#pack_1817">MITK-GEM</a>：关于本数据集的文档和教程可在我们的<a href="http://araex.github.io/mitk-gem-site/">教程网站</a>上找到。源代码可在我们的<a href="https://github.com/araex/mitk-gem">GitHub页面</a>上获取。</li>
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