University of Chicago Breast Cancer Recurrence Score Dataset

Extracted tiles from slide images used for validation of our deep learning recurrence score model.

Please refer to the github project page for instructions on use.

The UCH_BRCA_RS zip file contains the image tiles used for model validation. The 'tfrecords' element in the 'UCH_BRCA_RS' entry in the dataset.json file should be updated to reflect the location where this folder is extracted.

The ROI zip file contains the tumor region annotations used for tumor likelihood model training. The TCGA BRCA project 'roi' entries in the dataset.json file should be updated to point to these subfolders.

The PROJECTS zip file contains trained models used for the published analysis of this work. This should be extracted into the PROJECTS directed included as part of the github repository.