Genome assemblies from "The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative"
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https://figshare.com/articles/dataset/Genome_assemblies_from_The_domestication_of_Cucurbita_argyrosperma_as_revealed_by_the_genome_of_its_wild_relative_/14370584
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资源简介:
Chromosome-level genome assemblies of Cucurbita argyrosperma subsp. argyrosperma and Cucurbita argyrosperma subsp. sororia. These results are published in the paper "The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative" in Horticulture Research.
Each genome contains the following files:
- Genome_sequences -> Genome sequences in FASTA format of the nuclear genome (20
chromosomes + unscaffolded contigs), the mitochondrial genomes
(fragmented) and the chloroplast genomes (complete circularized).
- Gene_annotation -> Gene models predicted within the nuclear genomes in GFF3 format.
- Gene_sequences -> FASTA sequences of the predicted gene models, including the amino
acid sequences and the CDSs of the protein-coding genes, as well as the
lincRNA transcripts in the case of C. argyrosperma
subsp. argyrosperma.
- Functional_annotation -> InterProScan and Swiss-Prot annotations in tab-separated
tables. The GO annotations for each gene are also included in
tab-separated tables, which were extracted directly from
the InterProScan results.
创建时间:
2021-04-04



