Chinese Spring WGS vs IWGSC RefSeq v1.0 Genome Assembly

WGS reads of Chinese Spring (ENA: PRJNA392179) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q

中国春小麦（ENA：PRJNA392179）的全基因组测序（WGS）读段，经Minimap2对IWGSC Triticum aestivum中国春参考基因组（RefSeq v1.0）进行比对。所生成的BAM文件（.bam）及其索引文件（.bam.bai）一同提供，并附带读段比对覆盖度的大规模并行基因测序（bigWig）文件（.bam.bw）。从这些BAM文件中调用单核苷酸多态性（SNP）变异，生成VCF文件（.bam.vcf.gz）及其索引文件（.bam.vcf.gz.tbi），并附有SNP密度（每10 kbp的SNPs数量）的大规模并行基因测序文件（.bam.vcf.w10000_s10000.bw）。VCF文件包含以下过滤值及其对应含义：PASS = 高质量（Q>=30）纯合子；Het = 高质量（Q>=30）杂合子；LowQualHom = 低质量（Q