Additional file 9: Figure S4. of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

No group of genes in this transcriptome are seemingly regulated independently of PTI. A scatterplot where the X coordinate equals induction by D29E pCPP45::avrPto(I96A,2xA) relative to a mock inoculation without bacteria, representing the PTI-induced transcriptome. Only RPKM values were used to select this data set, and there is not a set of genes strongly up- or down-regulated by the CD or CTD combined independently of PTI. (XLS 2504Â kb)