Scripts and analysis files for categorization of PKZILLA matching proteomic peptides into protein-unique, protein-multimatch & exon-unique, exon-multimatch categories.

A .zip file containing the source data files & Jupyter notebook for analysis of the Prymnesium parvum 12B1 PKZILLA-detecting proteomic results (https://doi.org/10.5281/zenodo.10023441), and the resulting files from the workflow. See "Analysis of proteomic results" section of the manuscript Materials and Methods for further detail. 

Key files:

'PKZILLA-1_classify_peptides.txt' - A plaintext report of the # of classified peptides for PKZILLA-1

'PKZILLA-2_classify_peptides.txt' - A plaintext report of the # of classified peptides for PKZILLA-2

'./hierarchical_classified_xlsx/' - Excel spreadsheets with the classified peptides for PKZILLA-1 and PKZILLA-2

'./Process_into_polypeptide_coordinates/' - Workflow, results, and plots for back-alignment of peptides back to PKZILLA-1 and PKZILLA-2 genomic loci