Additional file 4 of DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products

RMarkdown for reproducibility. The additional file 4 includes the different scripts used to test all HVR primers (for single HVR and HVR pairs), scripts used to customize the different database in order to use them in the different assignation tools, and scripts used for DAIRYdb validation. We mainly used bash and R scripts [101, 102]. The file is in html format and was generated starting from a Rmarkdown file. (HTML 1012 kb)