Clockwork database
收藏NIAID Data Ecosystem2026-05-01 收录
下载链接：
https://zenodo.org/record/8339802
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资源简介：
This database (clockwork) contains common sputum contaminants along with a selection of NTM genomes and H37Rv - as used in the Clockwork pipeline (https://github.com/iqbal-lab-org/clockwork). In addition, we added 17 high-quality M. tuberculosis genomes to this collection (from https://doi.org/10.1186/s13059-021-02474-0 - see mtb_gramtools_lineages.csv for the list of accessions).
The database was downloaded using the download_tb_reference_files.pl script. The 17 MTB genomes were downloaded from https://doi.org/10.5281/zenodo.4147301.
The db.tsv file contains a mapping from the sequence identifier to the category of that assembly - i.e. human, TB, Bacteria etc.
The minimap2.db.acc2tax.tsv maps those sequences with known accession numbers to their taxonomic identifier.
创建时间：
2024-02-15
