List of SNPs demonstrating effective reprogramming of HEF genome in dHybrid cells.

SNPS from list A and list B (see Materials and Methods), showing genomic position, the hybrid consensus sequence vs. reference sequence identified using SOAPsnp, frequencies for the 1st and 2nd best base, genome reads for HEFs and hFL cells determined using Affymetrix SNP6.0 array, and differential expression levels for dhFL cells and HEFs according to the RNA-seq analysis. The 1st/2nd best base frequency is the count of uniquely aligned reads corroborating the 1st/2nd best base divided by the overall sequencing depth of the site. Green and red rows represent genes that are respectively up- and down-regulated in HEF genome inside hybrid cells.