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Additional file 2 of Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

Figshare2020-08-12 更新2026-04-28 收录

数据链接：

https://figshare.com/articles/dataset/Additional_file_2_of_Spatial_patterns_of_CTCF_sites_define_the_anatomy_of_TADs_and_their_boundaries/12792816 数据链接链接失效反馈

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资源简介：

Additional file 2: Table S1. CTCF binding sites collection and associated annotations.

应用场景：

创建时间：

2020-08-12

染色体三维结构

活细胞成像

The intracellular position of genes may impact their expression, but it has not been possible to accurately measure the 3D position of chromosomal loci. In 2D, loci can be tracked using arrays of DNA-

DataCite Commons2025-01-15 更新100

Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans (ChIP-seq and Hi-C data). Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans (ChIP-seq and Hi-C data)

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Inspection of Hi-C and ChIP-seq data suggests that condensin DC is an X-chromosome enriched loop extruder that stalls at rex sites. Insertion of rex site on X-chromosome suggests orientation independe

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Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans. Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans

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拓扑关联域形成

This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series

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CTCF core and auxiliary motives described in Nakahashi et al "A genome-wide map of CTCF multivalency redefines the CTCF code"

CTCF结合位点

序列基序识别

Motif PWMs (meme output) and motif sequences from Nakahashi et al "A genome-wide map of CTCF multivalency redefines the CTCF code" (Cell Rep 2013, doi: 10.1016/j.celrep.2013.04.024, https://www.ncbi.

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chromosome 3D structure in colorectal cancer

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