Supplememntary table 1.xlsx

<br> Macrophage, BMDM, pro-inflammatory, innate immunity <br> Label free quantification of proteins identified by LC-MS/MS based proteomics in untreated BMDMs and BMDMs exposed to pro-inflammatory conditions. <br> BMDMs were treated for 24 h with [20 ng/mL] interferon gamma (IFN-γ), [20 ng/mL] lipopolysaccharide (LPS), [100 ng/mL] Pam2CSK4, [100 ng/mL] Pam3CSK4, [1 µM] unmethylated cytosine-phosphate-guanosine-oligodeoxynucleotides (CpG-ODNs), [1 µg/mL] single-stranded RNA (ssRNA) polyuridylic acid (poly (U)), [1 µg/mL] double-stranded RNA (dsRNA) polyadenylic:polyuridylic acid (poly(A:U)) and [1 µg/mL] dsRNA polyinosinic:polycytidylic acid (poly(I:C)). BMDMs were lysed, trypsin-digested and resulting peptides analysed by LC-MS/MS with an orbitrap mass spectrometer. <br> LFQ values were generated after searching the ion peak intensities against the mouse proteome using MaxQuant software. Statistical analysis and data collation were performed in the R statistical programming environment.