Additional file 3 of Quantifying steric hindrance and topological obstruction to protein structure superposition
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Additional file 3. Data from aligning CATH2.4 domains. NeamTM3to20NoEndContraction.mat Data from global RMSD and TM-align alignments of alpha carbon backbone curves. The maximal length of Reidemeister moves is varied from 3 to 20 and end-contractions are not allowed. Similar data for the smooth representation of the backbone curve are contained in NeamTMSmooth3to20NoEndContraction.mat and in NeamTMSmooth3to20EndContraction.matwhen allowing end-contractions of MaxLength=2/residues.
附加文件3:CATH2.4结构域对齐数据。NeamTM3to20NoEndContraction.mat文件包含全局均方根偏差(RMSD)和TM-align对齐的α碳骨架曲线数据。Reidemeister移动的最大长度从3变化至20,且不允许末端收缩。关于骨架曲线平滑表示的相似数据包含在NeamTMSmooth3to20NoEndContraction.mat和NeamTMSmooth3to20EndContraction.mat中,后者在允许末端收缩(最大长度为2/残基)的情况下提供。
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