Popoolation_Fst_all

Results from Fst calculation in Popoolation2 (Kofler et al. 2011). We calculated allele frequencies and Fst between all populations, using a minimum coverage of 8 reads per population (to exclude SNPs from transcripts expressed at low frequency), a pool size of 10, and a sliding window of 50bp. Columns show Fst for populations listed at top (for given 50bp SNP window), last column is average of all L. goodei and all L. parva comparisons. Contigs match velvet reference names. L. goodei populations: Upper Bridge (Wakulla River, Florida) and Everglades (26-Mile Bend, Florida). Freshwater L. parva populations: Pecos (Pecos River, Texas), Lower Bridge (Wakulla River, Florida), Delks (Delk's Bluff, Oklawaha River, Florida). Saltwater L. parva populations: Indian River (Atlantic Ocean, Florida Coast), St. Mark’s (Gulf of Mexico, Florida Coast), Bolivar Peninsula (Galveston Bay, Texas Coast).