Additional file 6 of Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success

Additional file 6: Table S5. Comprehensive list of candidate causal variants. The data for BS (A) and OB (B) are provided, with information regarding haplotypes and the potential candidate causal variants based on the reference sequence ARS-UCD1.2 [36] and the NCBI Annotation Release 106 [54], including variant effect predictions (siftScore [63] and MutPred2 score [64]) and base conservation scores (phyloP and phastCons [61, 62]). Furthermore, the genotype distributions across whole-genome sequencing and genotyping data are included.