Phylogenomic trees of MAGs isolated from lichen metagenomes

Supplementary files associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts from metagenomes Maximum likelihood phylogenetic trees of the MAGs isolated from lichen metagenomes. Includes three files: 1. bacterial.treefile This tree was calculated using IQ-TREE and are based on alignments of marker genes (for prokaryotes: 120 marker genes from GTDB-Tk). 2. fungal.treefile 3. algal.treefile These two trees were calculated using the Phylociraptor pipeline. The trees were based on 1296 genes in algae and 709 genes in fungi. Concatenated phylogenies were calculated using IQ-TREE本数据集为Tagirdzhanova等人2023年发表的关于地衣共生菌宏基因组全球普查研究的配套补充文件，核心内容为从地衣宏基因组中分离得到的宏基因组组装基因组（MAGs, Metagenome-Assembled Genomes）的最大似然系统发育树。本数据集包含以下三个文件：1. bacterial.treefile：该系统发育树由IQ-TREE软件构建，基于标记基因的比对序列，其中原核生物使用GTDB-Tk提供的120个标记基因；2. fungal.treefile与3. algal.treefile：这两棵系统发育树通过Phylociraptor流程构建，其中藻类系统发育树基于1296个基因的序列比对，真菌系统发育树基于709个基因的序列比对；所有拼接式系统发育树均通过IQ-TREE软件计算生成。