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Dataset - A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics

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Zenodo2021-05-21 更新2026-04-07 收录
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<strong>Models and dataset needed to reproduce the results for the manuscript "A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics" by O. Oftadeh et all</strong> The code to generate yETFL models and reproduce the results of this manuscript is available at https://github.com/EPFL-LCSB/yetfl/ and https://gitlab.com/EPFL-LCSB/yetfl/. The execution of this code is dependent on the ETFL repository available at https://github.com/EPFL-LCSB/etf and https://gitlab.com/EPFL-LCSB/etfl. Models: File input_models.zip contains a structure with thermodynamically and stoichiometrically curated genome-scale model of S. cerevisiae in MATLAB's mat format (based on Yeast8.3.4) Datasets: File thermo_data_yeast8.mat contains a thermodynamic database for the standard formation free Gibbs energy of formation of different metabolites in Yeast8. File info_yeast.zip contains data needed to run the code stored on the GitHub and Gitlab repositories.

提供机构:
Curvat Maxime; EPFL
创建时间:
2021-05-21
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