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Processed per-feature R-loop occupancy and transcription tables for a two-state threshold analysis in E. coli and S. cerevisiae

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Zenodo2026-09-28 更新2026-10-01 收录
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Processed, per-feature tables generated for Rahman, Transcription-gated R-loop formation supports a two-state threshold model in Escherichia coli and budding yeast. Derived from public raw data (GEO GSE181945, GSE181687, GSE95567; SRA SRP071346); no new sequencing. Contents: (1) an E. coli per-transcription-unit table of transcriptional drive (FPKM) with MuSGS reference coordinates and strand; (2) E. coli per-transcription-unit R-loop occupancy calls (binary and positive-window counts) for wild-type, topoisomerase I ΔCTD, and ΔCTD + rifampicin conditions; (3) an S. cerevisiae table of hybrid-prone open reading frames (rnh1Δ rnh201Δ S1-DRIP-seq) matched to genome-wide expression. Column definitions are in the accompanying README. These tables regenerate the figures when run with the companion analysis code (see related Zenodo software record).

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2026-09-28
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