An improved TIGER2 implementation for NAMD suitable for the Blue Gene architecture
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Abstract
Here we present an improved implementation of the TIGER2 Replica Exchange Molecular Dynamics (REMD) method, using the replica exchange Application Programming Interface (API) found in contemporary versions of the NAMD Molecular Dynamics Package. The implementation takes the form of a TCL script which is used in conjunction with the standard configuration file. This implementation is validated against a previous TIGER2 implementation, as well as data reported for the original TIGER2 simulation...
Title of program: TIGER2-NAMD
Catalogue Id: AEWC_v1_0
Nature of problem
Replica Exchange Molecular Dynamics
Versions of this program held in the CPC repository in Mendeley Data
AEWC_v1_0; TIGER2-NAMD; 10.1016/j.cpc.2015.02.025
This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
创建时间：
2015-01-01
