Rat T2T genome assembly, rat pangenome and supporting files

Genome assembly fasta: SHRSP_T2T_submit.fa.gz Gene annotation gff by Liftoff: SHRSP_T2T_2-25.sorted.gff Braker3 annotation gff: braker.sorted.gff3 RepBase annotation gff: SHRSP_Repeatmasker_annotated_sorted.gff3 Iso-Seq HQ reads aligned to assembly bam file: SHR_A3_IsoSeq_HQ_clustered_19tiss_no_sec.sorted.bam Rat pangenome graph (8 strains): rat_pg.gfa.gz Rat pangenome SV length variants: rat_pg.svlen.vcf.gz基因组组装FASTA格式文件：SHRSP_T2T_submit.fa.gz 基于Liftoff工具的基因注释GFF（General Feature Format）格式文件：SHRSP_T2T_2-25.sorted.gff Braker3注释GFF3（General Feature Format Version 3）格式文件：braker.sorted.gff3 基于RepBase数据库的重复序列注释GFF3格式文件：SHRSP_Repeatmasker_annotated_sorted.gff3 比对至组装序列的Iso-Seq高质量测序读段BAM（Binary Alignment Map）格式文件：SHR_A3_IsoSeq_HQ_clustered_19tiss_no_sec.sorted.bam 8个品系大鼠泛基因组图GFA（Graphical Fragment Assembly）格式文件：rat_pg.gfa.gz 大鼠泛基因组结构变异长度变异体VCF（Variant Call Format）格式文件：rat_pg.svlen.vcf.gz