PlantGATA v1.0 – Plant GATA Transcription Factor Dataset
收藏资源简介:
The PlantGATA v1.0 dataset contains comprehensive information on plant GATA transcription factors (TFs), including predicted protein sequences, functional annotation, gene structure, and genome metadata. This release includes:- FASTA sequences of all predicted GATA TF proteins (PlantGATA_all_proteins_13969GATA.fasta) and the high-confidence subset (PlantGATA_all_highlyconf_proteins_13101GATA.fasta)- Well-curated reference set of experimentally validated GATA TFs (PlantGATA_well_curated_700GATA.fasta)- Annotation tables: - Detailed Information of All GATA TFs.csv - Detailed Information of All Gene Structure.csv - Detailed Information of All Genomes.csv - GATA TF - Loci Mapping.csv - Biological Function of GATA TFs.csv - Genome-wide Identification Study.csv - Total Genome Statistics.csv- SHA-256 checksum for data integrity verification (PlantGATA_v1.0.sha256)- Readme with dataset description and usage instructions (readme.md) Methods Summary:- Protein domain annotation: InterProScan v5.74, Pfam PF00320, E-value cutoff 1e-5- Post-processing scripts for data parsing and gene/transcript mapping- Quality control includes minimum domain coverage, zinc-finger integrity check, and exclusion of chimeric or partial sequences- All sequences are mapped to their corresponding loci and source genomes This dataset supports reproducible research and cross-species functional analysis of plant GATA transcription factors. It is licensed under CC-BY 4.0.



