Assembly and annotation for great gerbil
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Approximantely 86x coverage of Illumina paired end reads were assembled with ALLPATHS-LG resulting in a highly contiguous scaffold assembly. An iterative automatic annotation with MAKER2 using a mouse cDNA set (Ensembl) and proteins from Uniprot/SwissProt resulted in 70,974 predicted gene models. InterProScan was run on the predicted predicted proteins and gene names were allocated based on match with proteins in UniProt/SwissProt. We filtered this set based on Annotation Edit Distance (AED) using the deafult filtering parameter, creating a file set containing all genes with AED less than 1 (AED
创建时间：
2020-01-30
