Repression of translation by uORFs is not widespread but highly gene-specific

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Scer_CDS.gtf:
annotation file coding sequences S. cerevisiae

Scer_5UTR.gtf:
annotation file 5'UTR sequences S. cerevisiae

Spom_CDS.gtf:
annotation file coding sequences S. pombe

Spom_5UTR.gtf:
annotation file 5'UTR sequences S. pombe

Scer_uORFs.fa: upstream ORF (uORF)
sequences S. cerevisiae

Spom_uORF.fa: upstresm ORF (uORF)
sequences S. pombe

Scer.aa-_5UTR_counts.txt: table of
counts 5'UTR Scer.aa-

Scer.aa-_CDS_counts.txt: table of
counts coding sequences Scer.aa-

Scer.aa_uORF_counts.txt: table of
counts uORFs Scer.aa-

Scer.Oxi_5UTR_counts.txt: table of
counts 5'UTR Scer.Oxi

Scer.Oxi_CDS_counts.txt: table of
counts CDS Scer.Oxi

Scer.Oxi_uORF_counts.txt: table of
counts uORFs Scer.Oxi

Spom_N-_5UTR_counts.txt: table of
counts 5'UTR Spom.N-

Spom_N-_CDS_counts.txt: table of counts
CDS Spom.N-

Spom_N-_uORF_counts.txt: table of
counts uORFs Spom.N-

translated_uORF_Spom.N-.txt: modified
RibORF output Spom.N-

SUB_Scer.aa-_CDS_counts.xls: subsampled
table of counts CDS Scer.aa-

SUB_Scer.Oxi_CDS_counts.xls:
subsampled table of counts CDS Scer.Oxi

SUB_Spom.N-_CDS_counts.xls: subsampled
table of counts CDS Spom.N-

Scer.aa-_DE_genes.xlsx: differentially
expressed genes based on CDS counts Scer.aa-

Scer.Oxi_DE_genes.xlsx: differentially
expressed genes based on CDS counts Scer.Oxi

Spom.N-_DE_genes.xlsx: differentially
expressed genes based on CDS counts Spom.N-

Scer.aa-_TE_genes.xlsx: genes with
significantly different TE in stress vs normal Scer.aa-

Scer.Oxi_TE_genes.xlsx: genes with
significantly different TE in stress vs normal Scer.Oxi

Spom.N-_TE_genes.xlsx: genes with
significantly different TE in stress vs normal Spom.N-
S_5UTR.list: list of S.cerevisiae genes with 5'UTR sequences available