A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)

A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)
Samuel D. Hervey, Linda Y. Rutledge, Brent R. Patterson, Mark C. Romanski, John A. Vucetich, Jerrold L. Belant, Dean E. Beyer, Jr., and Kristin E. Brzeski

HERVEY2021_SupplementaryFigures&Tables.docx
>>>>word document containing the referenced supplementary figures and tables from the main text

HERVEY2021_Microsatellites_ISRO&ReferenceSamples.csv
>>comma-delimited file with genotypes for each of the canid samples used for both population structure and genetic diversity estimates of Isle Royale founders and to inform the agent-based models assigned genotypes
ID = Identifier of canid sample
Location = Geographic region of canid sample
Species = Species assignment of canid sample
NOTE: All remaining columns represent each locus ID followed by "-1" or "-2" indicating the first or second allele of the genotype
NOTE: Empty cells ("-9") represent missing genotypes

HERVEY2021_ODD.docx
>>word document containing the full description of the agent-based model found in the main text as well as additional parameters that can be used to simulate alternative scenarios

HERVEY2021_ISROnetlogo.nlogo
>>netlogo file containing the agent-based model required for running all simulations of observed heterozygosity and inbreeding projections of the Isle Royale population
NOTE: A description of the model can be found in the Overview, Design Concepts, and Detail ("HERVEY2021_ODD.docx") supplementary file
NOTE: To run the agent-based simulation with multiple replicates and/or multiple treatments (e.g. migration = 0.0, 0.5, 1.0 with 100 replicates each) navigate to Tools>BehaviorSpace. 
You will also find on this specific file the saved parameters for recreating Figure 4 from the main text, Figure 2 from the ODD, and Figure 3 from the ODD.

HERVEY2021_Reformatting_Netlogo_Output.R
>>R script file containing code for both reformatting the ouput file from Netlogo (if "data-ouput?" is set to On) and how to use R package 'pedigree' to calculate inbreeding coefficients