PSET SARS-CoV-2 Supplement

Table S1. Variation. Variant counts and percentages are listed by position and type together with reference and alternate allele. Table S2. Regional Mutation Frequency. The number of mutations by position are listed by position and region type (assay or non-assay. Table S3. Regional Mutation Percentage. The percentage of positions with a given number of mutations is listed for assay and non-assay regions. Table S4. Confusion Matrix. For each assay, the confusion matrix categorizes sequence alignment results by assay according to the workflow rules. Table S5. Near Neighbor Analysis. This is the confusion matrix for each assay according to a previous workflow described on virological.org that looked at off-target species. Table S6. Variant Call Date. This table lists the date of VoC or VoI designation by each disease control center. Table S7. Assay Escape Count. The first column lists the FN count associated with the total number of sequences listed in the second column. Table S8. Predicted Shared Failure. This table lists the number of times an assay was observed failing with n other assays. In other words, the numeric column names represent the number of other assays that failed for a given sequence with the assay in the id column.