Phylogenetic status of strain RL was determined using 400 conserved bacterial marker genes and representative whole genome sequences from 40 diverse Pseudomonas species as available in NCBI database (
Recombination is an important evolutionary force in bacteria, but it remains challenging to reconstruct the imports that occurred in the ancestry of a genomic sample. Here we present ClonalFrameML, wh
SLV permitted = authorizing VNTR single locus variants (SLV) or one « missing data » locus. composite = spoligo+VNTR dataset; patterns with missing data are treated as unique patterns, ** Not appli