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The number of 10-mers needed to hit all 30-long sequences in four genomes: Two bacterial genomes A. tropicalis, C. crescentus, the worm C. elegans and a mammal genome, H. sapiens.

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Figshare2017-11-01 更新2026-04-29 收录
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https://figshare.com/articles/dataset/The_number_of_10-mers_needed_to_hit_all_30-long_sequences_in_four_genomes_Two_bacterial_genomes_i_A_tropicalis_i_i_C_crescentus_i_the_worm_i_C_elegans_i_and_a_mammal_genome_i_H_sapiens_i_/5459881
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The genome sizes are quoted after removing all Ns and ambiguous codes. We tested three algorithms: minimizers picking the lexicographically smallest 10-mer, minimizer picking the first in a random k-mer ordering, and selection using the set produced by DOCKS. In case of multiple DOCKS-selected 10-mers in the 30-long window, the lexicographically smallest was chosen. # mers is the number of distinct 10-mers selected, and avg. dist. is the average distance between two selected 10-mers.
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2017-11-01
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