Association analysis of haplotypes of CFA11, CFA5, and CFA14 loci with the phenotype in predisposed breeds.

The CFA11:41 Mb haplotype was determined by the genotype of the following SNVs: 41144469, 41161357, 41161441*, 41163558, 41166847, 41176819*, 41185205, 41192676, 41196587*, 41200012, 41204074, 41215628, 41217026*, 41218376, and 41252822. The CFA11:44 Mb haplotype was determined by the genotype of the following SNVs: 43263273, 43272660, 43290639, 43317981, 43690075*, 44070751, 44097553*, 44098601*, 44099662, 44121253, 44126921, 44129025, 44135605, 44150645*, 44152497, 44364615, 44366678, and 44367106*. The CFA5:33 Mb haplotype was determined by the genotype of the following SNVs: 33650581, 33788841*, 33801240*, 33807500*, 33823740*, 33839057, 33872506*, 33879286, 33883533, 33883991, 33897576, 33900059, 33906211, 33916864, 34213158, 34217528, 34220300, 34225552, 34225906, 34227643, 34231901*, 34232173, 34234461, 34239783*, 34240989, 34246822, and 34321500. The CFA14:11 Mb haplotype was determined by the genotype of the following SNVs: 11021670, 11023871, 11026224, 11028349, 11030215, 11033259, 11041572, 11067136, 11070626, 11077346, 11083217, 11092391, 11094795*, and 11108670. At risk haplotype in the breeds are represented in bold. CI: confidence interval (Woolf Method). * SNVs from the 173K SNV Canine HD.