Differential abundance analysis workflow (16S rRNA gene profiling data) - Example
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https://figshare.com/articles/dataset/Differential_abundance_analysis_workflow_16S_rRNA_gene_profiling_data_-_Example/3811251
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In order to test for the differential abundance of taxa that may drive the differences observed between inferred microbial communities derived from the different DNA isolation procedures, we performed DESeq2 analyses. Here we provide an example for such an analysis from human fecal specimen, examined using 16S rRNA gene profiling. This workflow relates to the article: <br>Berith E. Knudsen, Lasse Bergmark, Patrick Munk, Oksana Lukjancenko, Anders Priemé, Frank M. Aarestrup, Sünje J. Pamp (2016) Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition. <b><i>mSystems</i></b> Oct 2016, 1 (5) e00095-16; DOI: 10.1128/mSystems.00095-16 http://msystems.asm.org/content/1/5/e00095-16
提供机构：
figshare
创建时间：
2016-09-08
