Protein data. The archive Protein-data.tar.gz contains nine folders that each hold data of one data set used in this work. Each folder contains two subfolders called Alignments and Trees. Subfolder Al
The following datasets for phylogenetic analysis of proteins Cdc48, Uba1, Der1, Ubc4, Ubi, Hsp70, Tic110, Tic20 and Tic22 are provided: Unaligned sequences (fasta format), aligned sequences (fasta for
