Additional file 7 of DNA methylation, combined with RNA sequencing, provide novel insight into molecular classification of chordomas and their microenvironment

Additional file 7. Supplementary tables: DMP - differentially methylated probes, DMR - differentially methylated regions, DEG - differentially expressed genes, GSEA - gene set enrichment analysis, MethExpr_Correlation - correlation of promoter methylation with gene expression, DEG_DMR_Correlation - correlation of differentially expressed genes with methylation in DMRs, DEG_DMR overrepresentation - Overrepresentation analysis of DEGs correlated with DMRs, WGCNA_modules_significance - statistical testing of WGCNA modules association with methylation clusters, Immune_deconvolution - statistical testing of immune cell deconvolution with methylation clusters, conumee - estimation of CNAs in chordoma samples, GSEAlm - GSEAlm estimate of gene expression across chromosomal bands in the whole genome.