MOESM8 of Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale

Additional file 8. Microbial GWAS results aiming to associate accessory genes and coregenome variants of Salmonella enterica subsp. enterica serovars (n = 440) with animal sources (i.e. avian bovine, swine and fish). The microbial GWAS was performed with the workflow ‘microbial-GWAS’ based on Linear Mixed Model (LMM) for population structure correction and Wald tests for association. The genome dataset includes both genomes assigned to potential mono- and multi-animal sources based on a curated and synthesized version of Enterobase. The associated mutations (i.e. Wald tests) refer to polygenicity with regard to Quantile-Quantile (QQ) plots from microbial GWAS (i.e. p 5%) and low (i.e.