A first-generation Haplotype map (HapMap) of tea (Camellia sinensis L. O. Kuntz). Camellia sinensis

Here we have generated first HapMap of tea genome. RNA seq data was downloaded for a total of 369 tea accessions from National Genomics Data Center, BGI (Project ID: CRA001438; https://bigd.big.ac.cn/search?dbId=gsa&q=CRA001438) and EMBL-EBI (Project ID: PRJNA222497; https://www.ebi.ac.uk/ena/data/view/PRJNA222497). Tea polymorphisms were determined from these 369 taxa by mapping data against reference genome of tea (CSS_V1.2) (https://github.com/JiedanChen/TeaGenomeData) with mapping quality threshold 30.