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Summary of variant calling between Rec and Dom.
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创建时间：
2020-04-16
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Comparison between CNVRs detected in the study with those in the previous reports.
Note: The comparison was based on Sus scrofa assembly (10.2). For CNVRs based on the other porcine assembly, we firstly converted the data to current genome coordinates using the UCSC LiftOver tool (h
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Differences between accession 1408 and reference accession MTE in final mapping interval
Variants were called with SHORE v0.8 and pindel v0.2.4s. The FLC gene model is highlighted in bold and red.
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CNVs detected in 8 HapMap individuals shared between two studies.
*Criterion: Two CNVs from Conrad et al and Kidd et al were considered as the same if they shared at least 25% of the total length spanned. One CNV from Conrad et al can share with more than one CNV fr
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Comparisons of total and novel SNP and indel intersections of B 1 vs. T 1 and B 2 vs. T 2 . B 1 , T 1 :pooled S 1 calls from BGI and TÜBİTAK datasets; B 2 , T 2 :pooled S 2 calls from BGI and TÜBİTAK datasets, respectively.
Comparisons of total and novel SNP and indel intersections of B1 vs. T1 and B2 vs. T2. B1, T1:pooled S1 calls from BGI and TÜBİTAK datasets; B2, T2:pooled S2 calls from BGI and TÜBİTAK datasets, respe
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